A SAM, opened as the alignment it is

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A hundred and fifty PacBio HiFi reads as minimap2 placed them, read straight out of the SAM: the file says where every read goes and readhit reads the CIGARs. Nothing is aligned or trimmed here — showing a picture the file does not contain would be the one thing a viewer must not do. The reads bring their own quality with them, and at Q93 a HiFi base is about as settled as a base gets.

readhit displaying a SAM file of 150 PacBio HiFi reads on a 1.6 kb reference, placed by their CIGAR records, with the readout of the clicked column showing 77-fold depth and a Q93 base, dark theme
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