A SAM, opened as the alignment it is
Dark themeA hundred and fifty PacBio HiFi reads as minimap2 placed them, read straight out of the SAM: the file says where every read goes and readhit reads the CIGARs. Nothing is aligned or trimmed here — showing a picture the file does not contain would be the one thing a viewer must not do. The reads bring their own quality with them, and at Q93 a HiFi base is about as settled as a base gets.
