A run on one gene, read as a pileup

Dark theme

Four hundred amplicon reads on a 451 bp target: reads that do not overlap share a line, so the set takes a screenful instead of four hundred rows. Under the reference sit the depth profile and the consensus — the depth is the height of the bar, and the colours inside it are the bases that disagree. The reads are placed by minimap2 compiled to WebAssembly, in a worker, or by the built-in aligner.

readhit showing four hundred sequencing reads aligned to one reference gene as a packed pileup, with the coverage depth profile and the consensus sequence under the reference, dark theme
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